Retrieve the motifs from the pfms slot

Given a MotifMatcher object, return the motifs, which are stored in the pfms slot.

# S4 method for MotifMatcher
getPfms(obj)

Arguments

obj	An object of class MotifMatcher

Value

The list of motif matrices stored in the pfms slot.

Examples

# Return the default matrix of JASPAR motifs
library(MotifDb)
motifMatcher <- MotifMatcher(genomeName="hg38", pfms = as.list(query(MotifDb, "sapiens")))
motifs <- getPfms(motifMatcher)