Retrieve the assay matrix of gene expression data from a Solver object

Retrieve the assay matrix of gene expression data from a Solver object

# S4 method for Solver
getAssayData(obj)

Arguments

obj	An object of class Solver

Value

The assay matrix of gene expression data associated with a Solver object

Examples

# Create a Solver object using the included Alzheimer's data and retrieve the matrix
load(system.file(package="trena", "extdata/ampAD.154genes.mef2cTFs.278samples.RData"))
targetGene <- "MEF2C"
candidateRegulators <- setdiff(rownames(mtx.sub), targetGene)
solver <- Solver(mtx.sub, targetGene, candidateRegulators)
mtx <- getAssayData(solver)