add PCA-based summary stats on all TFs in the model

add PCA-based summary stats on all TFs in the model

# S4 method for PCAMax
addStatsSimple(
  obj,
  varianceToInclude = 0.75,
  scalePCA = FALSE,
  excludeLasso = TRUE,
  quiet = TRUE
)

Arguments

obj

An object of the class PCAMax
varianceToInclude

numeric variance to include in the PCA
scalePCA

logical
excludeLasso

logical excluding lasso avoids dropping TFs due to shrinkage
quiet

logical

Value

the original model with extra columns: pcaMax, cov, PC1, PC2,